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B6db families:
Description Succinyldiaminopimelate aminotransferase
Notes The gene coding for succinyldiaminopimelate aminotransferase in bacteria is termed DapC. However in the literature confusion still exists regarding the gene acronym-enzyme relationships of the dapC and dapD genes, and in several database annotations dapD genes are still incorrectly reported to code for the N-succinyl-L,L-diaminopimelate aminotransferase.
PLP Fold Type I
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type I

Number of sequences 19
Sequences in seed alignment
BacteriaSCL50868 (Micromonospora yangpuensis); ZP_00085160 (Pseudomonas fluorescens); ZP_00004026 (Nitrosomonas europaea); WP_058041411 (Streptomyces sp. MBT76); ZP_00044889 (Magnetococcus sp. MC-1); ABE31284 (Burkholderia xenovorans LB400); AAF41303 (Neisseria meningitidis MC58); ZP_00064953 (Microbulbifer degradans 2-40); NP_888727 (Bordetella bronchiseptica); ZP_00091554 (Azotobacter vinelandii); WP_016696136 (Rhodococcus rhodochrous); WP_068576922 (Pseudomonas sp. BIOMIG1BD); Q8NRE6_CORGL (Corynebacterium glutamicum); AAQ58129 (Chromobacterium violaceum); CAA08874 (Bordetella pertussis); WP_083978462 (Micromonospora rosaria); AAM13981 (Pseudomonas syringae); CAD15096 (Ralstonia solanacearum); AAG07047 (Pseudomonas aeruginosa);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence CAA08874
Domain interval 30-389
Catalytic site 245 K
 Manning ME, Danson EJ, Calderone CT (2018) Functional chararacterization of the enzymes TabB and TabD involved in tabtoxin biosynthesis by Pseudomonas syringae Biochem Biophys Res Commun 496 212-217.

 Marienhagen J, Kennerknecht N, Sahm H, Eggeling L. (2005) Functional analysis of all aminotransferase proteins inferred from the genome sequence of Corynebacterium glutamicum J Bacteriol 187 7639-46.

 Fuchs, T. M.; Schneider, B.; Krumbach, K.; Eggeling, L.; Gross, R. (2000) Characterization of a bordetella pertussis diaminopimelate (DAP) biosynthesis locus identifies dapC, a novel gene coding for an N- succinyl-L,L-DAP aminotransferase J Bacteriol 182 3626-31.

Articles on
last changed 2014/02/24 13:50

B6db families