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B6db families: 4.3.1.18.a

4.3.1.18 a
Activity 4.3.1.18
Description D-serine ammonia-lyase. (family a)
Notes A family of fold-type II proteins, built based on the functionally validated E. coli enzyme.
Only bacterial sequences have been included, and they are distantly related to those of other lyases such as 4.3.1.15 (diaminopropionate ammonia-lyase) and 4.3.1.19 (L-Thr ammonia-lyase).

D-serine ammonia lyase from E. coli is monomeric.

PDB 3R0Z;
PLP Fold Type II
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type II

Number of sequences
13
Sequences in seed alignment
BacteriaC82406 (Vibrio cholerae ); 3R0Z_A (Salmonella Typhimurium); ZP_00097990 (Desulfitobacterium hafniense); BAB05481 (Bacillus halodurans); D83225 (Pseudomonas aeruginosa ); CAD03191 (Salmonella enterica); NP_786154 (Lactobacillus plantarum); ZP_00223525 (Burkholderia cepacia); ZP_00123660 (Haemophilus somnus 129PT); NP_603450 (Fusobacterium nucleatum); SDHD_ECOLI (Escherichia coli); SDHD_BACSU (Bacillus subtilis); NP_929236 (Photorhabdus luminescens);

DISPLAY: Fasta format, alignment, hmm, hmm_local


Reference sequence SDHD_ECOLI
Domain interval 72-411
Catalytic site 118 K
 
References Articles on 4.3.1.18.a
last changed 2014/03/05 11:42

B6db families