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B6db families:
Description Ornithine racemase
Notes Family based on three validated sequences, very divergent from other fold-type III enzymes.
PLP Fold Type III
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type III

Number of sequences 15
Sequences in seed alignment
BacteriaWP_001829764 (Staphylococcus epidermidis); NP_461300 (Salmonella enterica serovar Typhimurium); WP_074918684 (Terrisporobacter glycolicus); WP_057978481 (Caloramator mitchellensis); WP_012849918 (Edwardsiella tarda); WP_012995105 (Thermoanaerobacter italicus); WP_045043034 (Photobacterium kishitanii); CAL28587 (Staphylococcus carnosus subsp. carnosus TM300); WP_028830226 (Proteocatella sphenisci); WP_054268961 (Clostridioides difficile); WP_072889388 (Tepidibacter formicigenes); WP_047426073 (Staphylococcus aureus); C1FW08 (Acetoanaerobium sticklandii DSM 519); WP_011302623 (Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305); WP_011722187 (Clostridium novyi NT);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence C1FW08
Domain interval 7-227
Catalytic site 35 K
 Phillips RS, Poteh P, Miller KA, Hoover TR (2017) STM2360 encodes a d-ornithine/d-lysine decarboxylase in Salmonella enterica serovar typhimurium Arch Biochem Biophys 634 83-87.

 Fonknechten N, Perret A, Perchat N, Tricot S, Lechaplais C, Vallenet D, Vergne C, Zaparucha A, Le Paslier D, Weissenbach J, Salanoubat M. (2009) A conserved gene cluster rules anaerobic oxidative degradation of L-ornithine J Bacteriol 191 3162-7.

 Chen, H. P.; Lin, c. f.; Lee, Y.J.; Tsay, S.S.; Wu S.H. (2000) Purification and properties of ornithine racemase from Clostridium sticklandii J Bacteriol 182 2052-4.

Articles on
last changed 2017/12/15 13:18

B6db families