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B6db families:
Description Succinyldiaminopimelate aminotransferase.
Notes The gene coding for succinyldiaminopimelate aminotransferase in bacteria is termed DapC. However in the literature confusion still exists regarding the gene acronym-enzyme relationships of the dapC and dapD genes, and in several database annotations dapD genes are still incorrectly reported to code for the N-succinyl-L,L-diaminopimelate aminotransferase.
PLP Fold Type I
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type I

Number of sequences
Sequences in seed alignment
BacteriaABE31284 (Burkholderia xenovorans LB400); CAA08874 (Bordetella pertussis); CAD15096 (Ralstonia solanacearum); ZP_00085160 (Pseudomonas fluorescens); ZP_00091554 (Azotobacter vinelandii); WP_016696136 (Rhodococcus rhodochrous); AAF41303 (Neisseria meningitidis MC58); ZP_00004026 (Nitrosomonas europaea); Q8NRE6_CORGL (Corynebacterium glutamicum); AE004785_11 (Pseudomonas aeruginosa); AAQ58129 (Chromobacterium violaceum); NP_888727 (Bordetella bronchiseptica); ZP_00044889 (Magnetococcus sp. MC-1); ZP_00064953 (Microbulbifer degradans 2-40);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence CAA08874
Domain interval 30-389
Catalytic site 245 K
References Articles on
last changed 2014/02/24 13:50

B6db families