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B6db families:
Description Succinylornithine transaminase
Notes The family was built based on two validated genes (from P. aeruginosa and E. coli). The sequences within this bacterial family are very similar to EC (Acetylornithine aminotransferase)
PLP Fold Type I
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type I

Number of sequences 7
Sequences in seed alignment
BacteriaASTC_ECOLI (Escherichia coli K12); YP_001334884 (Klebsiella pneumoniae); ZP_00830707 (Yersinia frederiksenii ATCC 33641); KES24870 (Pseudomonas sp. AAC); ARUC_PSEAE (Pseudomonas aeruginosa); YP_001479073 (Serratia proteamaculans 568); YP_609377 (Pseudomonas entomophila L48);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence ARUC_PSEAE
Domain interval 27-348
Catalytic site 255 K
 Newman J, Seabrook S, Surjadi R, Williams CC, Lucent D, Wilding M, Scott C, Peat TS. (2013) Determination of the structure of the catabolic N-succinylornithine transaminase (AstC) from Escherichia coli PLoS One. 8 e58298.

 Schneider BL, Kiupakis AK, Reitzer LJ. (1998) Arginine catabolism and the arginine succinyltransferase pathway in Escherichia coli J Bacteriol 180 4278-86.

 Itoh Y. (1997) Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa J Bacteriol 179 7280-90.

Articles on
last changed 2014/03/18 13:41

B6db families