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B6db families: 1
Description Arginine decarboxylase. (family 1)
Notes This family includes plant and proteobacterial (biosynthetic) arginine decarboxylases, which are fold-type III enzymes.
In contrast, the Escherichia coli biodegradative arginine decarboxylase and other bacterial arginine decarboxylases are fold-type I enzymes and have been grouped in family
PLP Fold Type III
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type III

Number of sequences
Sequences in seed alignment
BacteriaSPEA_ECOLI (Escherichia coli); NP_233201 (Vibrio cholerae); NP_284719 (Neisseria meningitidis); AAF09826 (Deinococcus radiodurans); AAS81619 (Thermus thermophilus); Q9PPF5 (Campylobacter jejuni); AAQ60544 (Chromobacterium violaceum); BAC09359 (Thermosynechococcus elongatus); SPA1_SYNY3 (Synechocystis sp. (strain PCC 6803)); YP_009641 (Desulfovibrio vulgaris); NP_487441 (Nostoc sp. PCC 7120); NP_812306 (Bacteroides thetaiotaomicron); ZP_00066511 (Microbulbifer degradans); CAE08874 (Synechococcus sp. WH 8102); AAM38760 (Xanthomonas axonopodis); BAC92011 (Gloeobacter violaceus);
ViridiplantaeSPE1_SOYBN (Glycine max); CAE02767 (Oryza sativa); SPE1_PEA (Pisum sativum); SPE1_BRAJU (Brassica juncea); SPE1_ORYSA (Oryza sativa); AAR08422 (Pringlea antiscorbutica); SPE1_AVESA (Avena sativa); SPE1_ARATH (Arabidopsis thaliana); SPE2_ARATH (Arabidopsis thaliana); SPE1_DIACA (Dianthus caryophyllus); AEQ02349 (Erythroxylum coca);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence SPE1_ARATH
Domain interval 107-384
Catalytic site 136 K
References Articles on
last changed 2008/09/12 15:17

B6db families