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B6db families: 2
Description Arginine decarboxylase (family 2)
Notes The family was built based on the sequence of the Escherichia coli (biodegradative) arginine decarboxylase.
The family encompasses only bacterial sequences belonging to the fold-type I group. (In contrast, plant arginine decarboxylases and the biosynthetic E. coli enzyme - included in family - belong to the fold-type III group).

Note that the sequences from gram- bacteria (including E. coli) are longer than those from gram+ bacteria, mainly due to the presence of an additional N-terminal domain in the enzymes from gram- species.

PLP Fold Type I
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type I

Number of sequences 10
Sequences in seed alignment
BacteriaNP_404807 (Yersinia pestis); ZP_00060969 (Clostridium thermocellum); ZP_00171293 (Ralstonia eutropha); NP_243506 (Bacillus halodurans); SPEA_BACSU (Bacillus subtilis); ZP_00182964 (Exiguobacterium sp.); ADIA_ECOLI (Escherichia coli); NP_435607 (Sinorhizobium meliloti); Q8ZHG8 (Yersinia pestis); NP_622677 (Thermoanaerobacter tengcongensis);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence ADIA_ECOLI
Domain interval 140-607
Catalytic site 386 K
References Articles on
last changed 2020/02/17 15:59

B6db families