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B6db families:
Description Carboxynorspermidine decarboxylase
Notes Family composed of bacterial fold-type III enzymes, distantly related to Diaminopimelate decarboxylase (EC
PLP Fold Type III
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type III

Number of sequences
Sequences in seed alignment
BacteriaNP_245308 (Pasteurella multocida); ZP_02925472 (Verrucomicrobium spinosum DSM 4136); EBA01096 (Marinobacter sp. ELB17); YP_943630 (Psychromonas ingrahamii); EDM64791 (Moritella sp. PE36); EAU47139 (Roseovarius sp. HTCC2601); YP_002263506 (Aliivibrio salmonicida LFI1238); NP_231262 (Vibrio cholerae); BAA06561 (Vibrio alginolyticus); NP_697368 (Brucella suis);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence BAA06561
Domain interval 14-244
Catalytic site 41 K
 Lee J, Sperandio V, Frantz DE, Longgood J, Camilli A, Phillips MA, Michael AJ. (2009) An alternative polyamine biosynthetic pathway is widespread in bacteria and essential for biofilm formation in Vibrio cholerae J Biol Chem 284 9899-907.

 Yamamoto S, Sugahara T, Tougou K, Shinoda S. (1994) Cloning and nucleotide sequence of the carboxynorspermidine decarboxylase gene from Vibrio alginolyticus Microbiology 140 3117-24.

Articles on
last changed 2014/02/19 12:16

B6db families