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B6db families: b
Description Aspartate racemase (family b)
Notes Sequences from invertebrates (mollusks) very similar to those of family (Serine racemase).
PLP Fold Type II
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type II

Number of sequences 3
Sequences in seed alignment
MetazoaXP_788957 (Strongylocentrotus purpuratus); RACD_ANABR (Scapharca broughtonii); AM587331 (Paracentrotus lividus);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence RACD_ANABR
Domain interval 22-322
Catalytic site 63 K
 Mizobuchi T, Nonaka R, Yoshimura M, Abe K, Takahashi S, Kera Y, Goto M (2017) Crystal structure of a pyridoxal 5'-phosphate-dependent aspartate racemase derived from the bivalve mollusc Scapharca broughtonii Acta Crystallogr F Struct Biol Commun 73 651-656.

 Abe K, Takahashi S, Muroki Y, Kera Y, Yamada RH. (2006) Cloning and expression of the pyridoxal 5'-phosphate-dependent aspartate racemase gene from the bivalve mollusk Scapharca broughtonii and characterization of the recombinant enzyme J Biochem 139 235-44.

 Shibata, K.; Watanabe, T.; Yoshikawa, H.; Abe, K.; Takahashi, S.; Kera, Y.; Yamada, R. (2003) Purification and characterization of aspartate racemase from the bivalve mollusk Scapharca broughtonii Comp Biochem Physiol B Biochem Mol Biol 134 307-314.

Articles on
last changed 2017/12/11 09:37

B6db families