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B6db families: c
Description Lysine racemase (family c)
Notes Very small family, based on the functionally validated enzyme from Thermotoga maritima. Sequences are quite dissimilar from those in familes and, but very similar to ornithine racemases (family Indeed, the enzyme from Thermotoga also shows a very high activity towards L- and D-ornithine.
PLP Fold Type III
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type III

Number of sequences 4
Sequences in seed alignment
BacteriaNP_229397 (Thermotoga maritima MSB8); WP_014451348 (Fervidobacterium pennivorans); WP_038067243 (Thermotoga neapolitana); WP_101510224 (Thermotoga sp. KOL6);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence NP_229397
Domain interval 8-226
Catalytic site 36 K
 Miyamoto T, Katane M, Saitoh Y, Sekine M, Homma H (2019) Elucidation of the D-lysine biosynthetic pathway in the hyperthermophile Thermotoga maritima FEBS J 286 601-614.

Articles on
last changed 2018/12/18 10:14

B6db families