B6db families : abmd

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abmd

Activity

Description

5'-glycyl-4'-thio uridine epimerase (5.1.1.-)

Notes

Small bacterial family of enzymes based on the product of the AbmD gene from Streptomyces sp. ATCC 700974.
Sequences distantly related to D-cysteine desulfhydrase (family 4.4.1.15).

PLP Fold Type

PLP-dependent Domain

Domain alignment
Domain hmm

Fold type II

Number of sequences

Sequences in seed alignment

Bacteria

KRV46483 (Streptomyces vitaminophilus); WP_111330828 (Streptomyces sp. AC1-42T); WP_085228885 (Paraburkholderia caryophylli); EFL19356 (Streptomyces sp. C); WP_104790541 (Streptomyces sp. QL37); AFJ20770 (Streptomyces sp. ATCC 700974);

DISPLAY: Fasta format, alignment, hmm, hmm_local

Reference sequence

AFJ20770

Domain interval

23-327

Catalytic site

60 K

References

Ushimaru R, Liu HW. (2019) Biosynthetic Origin of the Atypical Stereochemistry in the Thioheptose Core of Albomycin Nucleoside Antibiotics J Am Chem Soc 141 2211-2214.

Articles on abmd

last changed

2019/01/29 09:04