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B6db families: 2.6.1.52.a

2.6.1.52 a
Activity 2.6.1.52
Description Phosphoserine aminotransferase (family a)
Notes The phosphoserine aminotransferase activity (and the associated enzymes) are diffused in a great variety of organisms. The enzyme sequences are sufficiently similar to each other to be included in a single family, but the gene genealogies are rather confuse.

This family includes only two archaeal sequences, which are very similar to eubacterial (gram +) enzymes, possibly due to a recent horizontal gene transfer. In methanococcales a broad-specificity aminotransferase seems able to carry out the transamination of phosphoserine, as well as those of aspartate, glutamate, alanine, and cysteate (Helgadóttir et al., 2007, J Bacteriol 189(2):575-82). The sequences of these archaeal enzymes are most similar to those of alanine-glyoxylate aminotransferases (EC 2.6.1.51) and may be grouped in an independent family as soon as their substrate specificity becomes better defined.

PDB 1BT4;1BJO;1BJN;6CZX;5F8V;
PLP Fold Type I
PLP-dependent Domain
Domain alignment
Domain hmm
Fold type I

Number of sequences 42
Sequences in seed alignment
ArchaeaSERC_METBA (Methanosarcina barkeri); NP_634935 (Methanosarcina mazei Goe1);
BacteriaSERC_CHRVO (Chromobacterium violaceum); ZP_00093940 (Novosphingobium aromaticivorans); ZP_00151949 (Dechloromonas aromatica RCB); AAQ66358 (Porphyromonas gingivalis); SERC_ECOLI (Escherichia coli); SERC_PSEST (Pseudomonas stutzeri); NP_104887 (Mesorhizobium loti); SERC_HAEIN (Haemophilus influenzae); SERC_BACCR (Bacillus cereus); CAC08322 (Streptomyces coelicolor); SERC_YEREN (Yersinia enterocolitica); SERC_XENNE (Xenorhabdus nematophila); CAD74688 (Pirellula sp.); SERC_VIBVU (Vibrio vulnificus); SERC_LACLA (Lactococcus lactis (subsp. lactis)); SERC_PASMU (Pasteurella multocida); SERC_MYCTU (Mycobacterium tuberculosis); NP_696810 (Bifidobacterium longum); SERC_BACCI (Bacillus circulans); AAO76260 (Bacteroides thetaiotaomicron); SERC_BACSU (Bacillus subtilis); SERC_SALTY (Salmonella typhimurium); CAE29750 (Rhodopseudomonas palustris ); SERC_NEIMA (Neisseria meningitidis); CAD84244 (Nitrosomonas europaea );
FungiSERC_YEAST (Saccharomyces cerevisiae); SERC_SCHPO (Schizosaccharomyces pombe); CAD70964 (Neurospora crassa); EAA50300 (Magnaporthe grisea );
MetazoaNP_001040269 (Bombyx mori); SERC_CAEEL (Caenorhabditis elegans); AAH44467 (Danio rerio); SERC_DROME (Drosophila melanogaster); SERC_HUMAN (Homo sapiens); SERC_RABIT (Oryctolagus cuniculus);
Other_EukaryaXP_001327551 (Trichomonas vaginalis); BAD52335 (Entamoeba histolytica);
ViridiplantaeAAM51827 (Oryza sativa ); SERC_ARATH (Arabidopsis thaliana); SERC_SPIOL (Spinacia oleracea);

DISPLAY: Fasta format, alignment, hmm, hmm_local


Reference sequence SERC_ECOLI
Domain interval 3-349
Catalytic site 198 K
 
References Articles on 2.6.1.52.a
last changed 2020/02/20 09:53

B6db families